SCyCode-related publications
Below is a publication record from our studies since 2018.
2024
Kraus A., Spät P., Timm S., Wilson A., Schumann R., Hagemann M., Maček B., Hess W.R. (2024) Protein NirP1 regulates nitrite reductase and nitrite excretion in cyanobacteria. Nature Communications 15, 1911. DOI: 10.1038/s41467-024-46253-4.
2023
Zittlau K., Nashier P., Cavarischia-Rega C., Macek B., Spät P., Nalpas N. 2023. Recent progress in quantitative phosphoproteomics. Exp Rev Proteomics 20(12):469-482. DOI 10.1080/14789450.2023.2295872
Barske T., Spät P., Schubert H., Walke P., Maček B., Hagemann M. (2023) The role of serine/threonine-specific protein kinases in cyanobacteria - SpkB is involved in acclimation to fluctuating conditions in Synechocystis sp. PCC 6803. Molecular & Cellular Proteomics. doi: 10.1016/j.mcpro.2023.100656
Böhm J., Kauss K., Michl K., Engelhardt L., Brouwer E.M., Hagemann M. (2023) Impact of the carbon flux regulator protein pirC on ethanol production in engineered cyanobacteria. Front. Microbiol. 14: 1238737. DOI 10.3389/fmicb.2023.1238737.
Spät P., Krauspe V., Hess W.R., Maček B., Nalpas N. (2023) Deep Proteogenomics of a Photosynthetic Cyanobacterium. Journal of Proteome Research. doi: 10.1021/acs.jproteome.3c00065
2022
Lucius S., Theune M., Arrivault S., Hildebrandt S., Mullineaux C.W., Gutekunst K., Hagemann M. (2022) CP12 fine-tunes the Calvin-Benson cycle and carbohydrate metabolism in cyanobacteria. Front. Plant Sci. 13:1028794. doi: 10.3389/fpls.2022.1028794
Doello S., Neumann N., Forchhammer K. (2022) Regulatory phosphorylation event of phosphoglucomutase 1 tunes its activity to regulate glycogen metabolism. doi.org/10.1111/febs.16471
Wang Y., Chen X., Spengler K., Terberger K., Boehm M., Appel J., Barske T., Timm S., Battchikova N., Hagemann M., Gutekunst K. (2022) Pyruvate:ferredoxin oxidoreductase and low abundant ferredoxins support aerobic photomixotrophic growth in cyanobacteria. eLife 11:e71339. doi: 10.7554/eLife.71339
2021
Scheurer NM., Rajarathinam Y., Timm S., Kopka J., Hagemann M., Wilde A. (2021) Homologs of circadian clock proteins impact the metabolic switch between light and dark growth in the cyanobacterium Synechocystis sp. PCC 6803. Front Plant Sci 12: 657227. doi: 10.3389/fpls.2021.675227
Lucius S., Makowka A., Michl K., Gutekunst K., Hagemann M. (2021) The Entner-Doudoroff pathway contributes to glycogen breakdown during high to low CO2 shifts in the cyanobacterium Synechocystis sp. PCC 6803. Front Plant Sci 12: 787943; doi: 10.3389/fpls.2021.787943
Oren N., Timm S., Frank M., Mantovani O., Murik O., Hagemann M. (2021) Red/far-red light signals regulate the activity of the carbon-concentrating mechanism in cyanobacteria. Sci Adv 7, eabg0435. https://doi.org/10.1126/sciadv.abg0435
Semanjski, M., Gratani, F.L., Englert, T., Nashier, P., Beke, V., Nalpas, N., Germain, E., George, S., Wolz, C., Gerdes, K., Maček, B. (2021) Proteome Dynamics during Antibiotic Persistence and Resuscitation. mSystems. https://doi.org/10.1128/mSystems.00549-21
Spät, P., Barske, T., Maček, B. and Hagemann, M. (2021) Alterations in the CO2 availability induce alterations in the phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803. New Phytol. https://doi.org/10.1111/nph.17423
Orthwein T., Scholl J., Spät P., Lucius S., Koch M., Maček B., Hagemann M., Forchhammer K. (2021) The novel PII-interactor PirC identifies phosphoglycerate mutase as key control point of carbon storage metabolism in cyanobacteria. Proc. Natl. Acad. Sci. USA (PNAS) 118: e2019988118.
Riediger M., Spät P., Bilger R., Voigt K., Maček B., Hess W.R. (2021) Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq). The Plant Cell 10.1093/plcell/koaa017
Bolay P., Rozbeh R., Muro-Pastor MI., Timm S., Hagemann M., Florencio FJ., Forchhammer K., Klähn S. (2021) The novel PII-interacting protein PirA controls flux into the cyanobacterial ornithine-ammonia cycle. mBio, 10.1101/2020.11.23.395327
Doello, S., Burkhardt, M., Forchhammer, K. (2021) The essential role of sodium bioenergetics and ATP homeostasis in the developmental transitions of a cyanobacterium. Curr Biol. 10.1016/j.cub.2021.01.065
Krauspe V., Fahrner M., Spät P., Steglich C., Frankenberg-Dinkel N., Maček B., Schilling O., Hess W.R. (2021) Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria. Proc. Natl. Acad. Sci. USA (PNAS) 118: e2012277118
Zhan J., Steglich C., Scholz I., Hess W.R., Kirilovsky D. (2021) Inverse regulation of light harvesting and photoprotection mediated by a 3'end-derived sRNA in cyanobacteria. The Plant Cell, Volume 33, Issue 2, February 2021, Pages 358–380
Hagemann M., Song S., Brouwer EM. (2021) Inorganic carbon assimilation in cyanobacteria: Mechanisms, regulation, and engineering. In Hudson P (ed) Cyanobacteria Biotechnology, Wiley, Chapter 1, in press
Schmelling NM., Scheurer N., Köbler C., Wilde A., Axmann IM. Diversity of timing systems in Cyanobacteria and beyond. In: Circadian Rhythms in Bacteria and Microbiomes, Springer Nature, eds. Johnson C and Rust M., 978-3-030-72157-2, in press (book publication)
2020
Makowka, A., Nichelmann, L., Schulze, D., Spengler, K., Wittmann, C., Forchhammer, K, Gutekunst K. (2020) Glycolytic Shunts Replenish the Calvin–Benson–Bassham Cycle as Anaplerotic Reactions in Cyanobacteria. Molecular plant 13: 471-482
Koch, M., Bruckmoser, J., Scholl, J., Hauf, W. Rieger, B. and Forchhammer, K. (2020) Maximizing PHB content in Synechocystis sp. PCC 6803: a new metabolic engineering strategy based on the regulator PirC. Microb Cell Fact 19: 231
Wiegard A., Köbler C., Oyama K., Dörrich AK., Azai C., Terauchi K., Wilde A., Axmann IM. (2020) Synechocystis KaiC3 displays temperature and KaiB dependent ATPase activity and is important for growth in darkness. J. Bacteriol. 202, e00478-19.
Appel, J., Hueren, V., Boehm, M., Gutekunst, K. (2020) Cyanobacterial in vivo solar hydrogen production my means of a photosystem I-hydrogenase (psaD-hoxYH) fusion complex. Nature Energy
Theune, M. L., Hildebrandt, S., Steffen-Heins, A., Bilger, W., Gutekunst, K., Appel, J. (2020) In-vivo quantification of electron flow through photosystem I – Cyclic electron transport makes up about 35% in a cyanobacterium. Biochimica et Biophysica Acta (BBA) – Bioenergetics
Lambrecht J.S., Steglich C., Hess W.R. (2020) A minimum set of regulators to thrive in the ocean. FEMS Microbiology Reviews 44: 232-252
Muro-Pastor A.M., Hess W.R. (2020) Regulatory RNA at the crossroads of carbon and nitrogen metabolism in photosynthetic cyanobacteria. BBA - Gene Regulatory Mechanisms 1863, 194477: 1-12
2019
Koch, K. Doello, S. Gutekunst, K., Forchhammer, K. (2019) PHB is produced from Glycogen turn-over during nitrogen starvation in Synechocystis sp. PCC 6803. (2019) Int. J. Mol. Sci. 20 (8): 1942
Maček B., Forchhammer K., Hardouin J., Weber-Ban E., Grangeasse C., Mijakovic I. 2019. Protein post-translational modifications in bacteria. Nat Rev Microbiol 17 (11), 651-66
2018
Köbler C., Schultz SJ., Kopp D., Voigt K., Wilde A. (2018) The role of the Synechocystis sp. PCC 6803 homolog of the circadian clock output regulator RpaA in day-night transitions. Mol. Microbiol. 110, 847-861.
Gutekunst, K. (2018) Hypothesis on the Synchronistic Evolution of Autotrophy and Heterotrophy. Trends in Biochemical Sciences 43: 402-411